MedKoo Cat#: 585169 | Name: Sordarin

Description:

WARNING: This product is for research use only, not for human or veterinary use.

Sordarin is an antifungal mold metabolite of Sordaria araneosa, and sordarins A and B are stereoisomers.

Chemical Structure

Sordarin
Sordarin
CAS#11076-17-8

Theoretical Analysis

MedKoo Cat#: 585169

Name: Sordarin

CAS#: 11076-17-8

Chemical Formula: C27H40O8

Exact Mass: 492.2723

Molecular Weight: 492.61

Elemental Analysis: C, 65.83; H, 8.18; O, 25.98

Price and Availability

This product is currently not in stock but may be available through custom synthesis. To ensure cost efficiency, the minimum order quantity is 1 gram. The estimated lead time is 2 to 4 months, with pricing dependent on the complexity of the synthesis (typically high for intricate chemistries). Quotes for quantities below 1 gram will not be provided. To request a quote, please click the button below. Note: If this product becomes available in stock in the future, pricing will be listed accordingly.
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Related CAS #
No Data
Synonym
Sordarin; SL-2266; SL2266; SL 2266
IUPAC/Chemical Name
(1R,2S,4R,5R,8R,9S,11R)-2-[[(2R,3S,4S,5S,6R)-3,4-dihydroxy-5-methoxy-6-methyloxan-2-yl]oxymethyl]-9-formyl-5-methyl-13-propan-2-yltetracyclo[7.4.0.02,11.04,8]tridec-12-ene-1-carboxylic acid
InChi Key
OGGVRVMISBQNMQ-YPBSLCSMSA-N
InChi Code
InChI=1S/C27H40O8/c1-13(2)19-8-16-9-25(11-28)18-7-6-14(3)17(18)10-26(16,27(19,25)24(31)32)12-34-23-21(30)20(29)22(33-5)15(4)35-23/h8,11,13-18,20-23,29-30H,6-7,9-10,12H2,1-5H3,(H,31,32)/t14-,15-,16+,17-,18-,20+,21+,22-,23-,25+,26+,27+/m1/s1
SMILES Code
O=C([C@]12[C@]3(CO[C@@H]4O[C@H](C)[C@@H](OC)[C@@H](O)[C@@H]4O)C[C@]5([H])[C@H](C)CC[C@@]5([H])[C@@]1(C=O)C[C@]3([H])C=C2C(C)C)O
Appearance
Solid powder
Purity
>98% (or refer to the Certificate of Analysis)
Shipping Condition
Shipped under ambient temperature as non-hazardous chemical. This product is stable enough for a few weeks during ordinary shipping and time spent in Customs.
Storage Condition
Dry, dark and at 0 - 4 C for short term (days to weeks) or -20 C for long term (months to years).
Solubility
Soluble in DMSO
Shelf Life
>3 years if stored properly
Drug Formulation
This drug may be formulated in DMSO
Stock Solution Storage
0 - 4 C for short term (days to weeks), or -20 C for long term (months).
HS Tariff Code
2934.99.9001
More Info

Preparing Stock Solutions

The following data is based on the product molecular weight 492.61 Batch specific molecular weights may vary from batch to batch due to the degree of hydration, which will affect the solvent volumes required to prepare stock solutions.

Recalculate based on batch purity %
Concentration / Solvent Volume / Mass 1 mg 5 mg 10 mg
1 mM 1.15 mL 5.76 mL 11.51 mL
5 mM 0.23 mL 1.15 mL 2.3 mL
10 mM 0.12 mL 0.58 mL 1.15 mL
50 mM 0.02 mL 0.12 mL 0.23 mL
1: Chakraborty B, Sejpal NV, Payghan PV, Ghoshal N, Sengupta J. Structure-based designing of sordarin derivative as potential fungicide with pan-fungal activity. J Mol Graph Model. 2016 May;66:133-42. doi: 10.1016/j.jmgm.2016.03.013. Epub 2016 Mar 30. PubMed PMID: 27060894. 2: Chakraborty B, Mukherjee R, Sengupta J. Structural insights into the mechanism of translational inhibition by the fungicide sordarin. J Comput Aided Mol Des. 2013 Feb;27(2):173-84. doi: 10.1007/s10822-013-9636-8. Epub 2013 Feb 9. PubMed PMID: 23397219. 3: Zida A, Bamba S, Yacouba A, Ouedraogo-Traore R, Guiguemdé RT. Anti-Candida albicans natural products, sources of new antifungal drugs: A review. J Mycol Med. 2017 Mar;27(1):1-19. doi: 10.1016/j.mycmed.2016.10.002. Epub 2016 Nov 11. Review. PubMed PMID: 27842800. 4: Seyedmousavi S, Rafati H, Ilkit M, Tolooe A, Hedayati MT, Verweij P. Systemic Antifungal Agents: Current Status and Projected Future Developments. Methods Mol Biol. 2017;1508:107-139. PubMed PMID: 27837500. 5: Kudo F, Matsuura Y, Hayashi T, Fukushima M, Eguchi T. Genome mining of the sordarin biosynthetic gene cluster from Sordaria araneosa Cain ATCC 36386: characterization of cycloaraneosene synthase and GDP-6-deoxyaltrose transferase. J Antibiot (Tokyo). 2016 Jul;69(7):541-8. doi: 10.1038/ja.2016.40. Epub 2016 Apr 13. PubMed PMID: 27072286. 6: Søe R, Mosley RT, Justice M, Nielsen-Kahn J, Shastry M, Merrill AR, Andersen GR. Sordarin derivatives induce a novel conformation of the yeast ribosome translocation factor eEF2. J Biol Chem. 2007 Jan 5;282(1):657-66. Epub 2006 Nov 2. PubMed PMID: 17082187. 7: Chang YC, Lu CK, Chiang YR, Wang GJ, Ju YM, Kuo YH, Lee TH. Diterpene glycosides and polyketides from Xylotumulus gibbisporus. J Nat Prod. 2014 Apr 25;77(4):751-7. doi: 10.1021/np400523k. Epub 2014 Mar 5. PubMed PMID: 24597849. 8: Aviles P, Aliouat EM, Martinez A, Dei-Cas E, Herreros E, Dujardin L, Gargallo-Viola D. In vitro pharmacodynamic parameters of sordarin derivatives in comparison with those of marketed compounds against Pneumocystis carinii isolated from rats. Antimicrob Agents Chemother. 2000 May;44(5):1284-90. PubMed PMID: 10770763; PubMed Central PMCID: PMC89856. 9: Shastry M, Nielsen J, Ku T, Hsu MJ, Liberator P, Anderson J, Schmatz D, Justice MC. Species-specific inhibition of fungal protein synthesis by sordarin: identification of a sordarin-specificity region in eukaryotic elongation factor 2. Microbiology. 2001 Feb;147(Pt 2):383-90. PubMed PMID: 11158355. 10: Botet J, Rodríguez-Mateos M, Ballesta JP, Revuelta JL, Remacha M. A chemical genomic screen in Saccharomyces cerevisiae reveals a role for diphthamidation of translation elongation factor 2 in inhibition of protein synthesis by sordarin. Antimicrob Agents Chemother. 2008 May;52(5):1623-9. doi: 10.1128/AAC.01603-07. Epub 2008 Feb 19. PubMed PMID: 18285480; PubMed Central PMCID: PMC2346624. 11: Santos C, Ballesta JP. Role of the ribosomal stalk components in the resistance of Aspergillus fumigatus to the sordarin antifungals. Mol Microbiol. 2002 Jan;43(1):227-37. PubMed PMID: 11849550. 12: Odds FC, Brown AJ, Gow NA. Antifungal agents: mechanisms of action. Trends Microbiol. 2003 Jun;11(6):272-9. Review. PubMed PMID: 12823944. 13: Villahermosa D, Knapp K, Fleck O. A mutated dph3 gene causes sensitivity of Schizosaccharomyces pombe cells to cytotoxic agents. Curr Genet. 2017 Dec;63(6):1081-1091. doi: 10.1007/s00294-017-0711-x. Epub 2017 May 29. PubMed PMID: 28555368; PubMed Central PMCID: PMC5668335. 14: Justice MC, Ku T, Hsu MJ, Carniol K, Schmatz D, Nielsen J. Mutations in ribosomal protein L10e confer resistance to the fungal-specific eukaryotic elongation factor 2 inhibitor sordarin. J Biol Chem. 1999 Feb 19;274(8):4869-75. PubMed PMID: 9988728. 15: Domínguez JM, Gómez-Lorenzo MG, Martín JJ. Sordarin inhibits fungal protein synthesis by blocking translocation differently to fusidic acid. J Biol Chem. 1999 Aug 6;274(32):22423-7. PubMed PMID: 10428815. 16: Dewapriya P, Prasad P, Damodar R, Salim AA, Capon RJ. Talarolide A, a Cyclic Heptapeptide Hydroxamate from an Australian Marine Tunicate-Associated Fungus, Talaromyces sp. (CMB-TU011). Org Lett. 2017 Apr 21;19(8):2046-2049. doi: 10.1021/acs.orglett.7b00638. Epub 2017 Apr 6. PubMed PMID: 28383269. 17: Vicente F, Basilio A, Platas G, Collado J, Bills GF, González del Val A, Martín J, Tormo JR, Harris GH, Zink DL, Justice M, Kahn JN, Peláez F. Distribution of the antifungal agents sordarins across filamentous fungi. Mycol Res. 2009 Jun-Jul;113(Pt 6-7):754-70. doi: 10.1016/j.mycres.2009.02.011. Epub 2009 Feb 26. PubMed PMID: 19249360. 18: Helaly SE, Thongbai B, Stadler M. Diversity of biologically active secondary metabolites from endophytic and saprotrophic fungi of the ascomycete order Xylariales. Nat Prod Rep. 2018 Sep 19;35(9):992-1014. doi: 10.1039/c8np00010g. Review. PubMed PMID: 29774351. 19: Saini P, Eyler DE, Green R, Dever TE. Hypusine-containing protein eIF5A promotes translation elongation. Nature. 2009 May 7;459(7243):118-21. doi: 10.1038/nature08034. PubMed PMID: 19424157; PubMed Central PMCID: PMC3140696. 20: Santos C, Rodríguez-Gabriel MA, Remacha M, Ballesta JP. Ribosomal P0 protein domain involved in selectivity of antifungal sordarin derivatives. Antimicrob Agents Chemother. 2004 Aug;48(8):2930-6. PubMed PMID: 15273103; PubMed Central PMCID: PMC478497.