1: Bräuer KE, Brockers K, Moneer J, Feuchtinger A, Wollscheid-Lengeling E, Lengeling A, Wolf A. Phylogenetic and genomic analyses of the ribosomal oxygenases Riox1 (No66) and Riox2 (Mina53) provide new insights into their evolution. BMC Evol Biol. 2018 Jun 19;18(1):96. doi: 10.1186/s12862-018-1215-0. PubMed PMID: 29914368; PubMed Central PMCID: PMC6006756.
2: Halsey CR, Lei S, Wax JK, Lehman MK, Nuxoll AS, Steinke L, Sadykov M, Powers R, Fey PD. Amino Acid Catabolism in Staphylococcus aureus and the Function of Carbon Catabolite Repression. MBio. 2017 Feb 14;8(1). pii: e01434-16. doi: 10.1128/mBio.01434-16. PubMed PMID: 28196956; PubMed Central PMCID: PMC5312079.
3: Zurlo G, Guo J, Takada M, Wei W, Zhang Q. New Insights into Protein Hydroxylation and Its Important Role in Human Diseases. Biochim Biophys Acta. 2016 Dec;1866(2):208-220. doi: 10.1016/j.bbcan.2016.09.004. Epub 2016 Sep 20. Review. PubMed PMID: 27663420; PubMed Central PMCID: PMC5138100.
4: Blancquaert L, Baba SP, Kwiatkowski S, Stautemas J, Stegen S, Barbaresi S, Chung W, Boakye AA, Hoetker JD, Bhatnagar A, Delanghe J, Vanheel B, Veiga-da-Cunha M, Derave W, Everaert I. Carnosine and anserine homeostasis in skeletal muscle and heart is controlled by β-alanine transamination. J Physiol. 2016 Sep 1;594(17):4849-63. doi: 10.1113/JP272050. Epub 2016 Jun 2. PubMed PMID: 27062388; PubMed Central PMCID: PMC5009790.
5: Sun G, Nematollahi A, Nadvi NA, Kwan AH, Jeffries CM, Church WB. Expression, purification and crystallization of human kynurenine aminotransferase 2 exploiting a highly optimized codon set. Protein Expr Purif. 2016 May;121:41-5. doi: 10.1016/j.pep.2016.01.004. Epub 2016 Jan 8. PubMed PMID: 26773745.
6: Hanai M, Sato Y, Miyagi A, Kawai-Yamada M, Tanaka K, Kaneko Y, Nishiyama Y, Hihara Y. The Effects of Dark Incubation on Cellular Metabolism of the Wild Type Cyanobacterium Synechocystis sp. PCC 6803 and a Mutant Lacking the Transcriptional Regulator cyAbrB2. Life (Basel). 2014 Nov 21;4(4):770-87. doi: 10.3390/life4040770. PubMed PMID: 25423139; PubMed Central PMCID: PMC4284466.
7: Valentini M, García-Mauriño SM, Pérez-Martínez I, Santero E, Canosa I, Lapouge K. Hierarchical management of carbon sources is regulated similarly by the CbrA/B systems in Pseudomonas aeruginosa and Pseudomonas putida. Microbiology. 2014 Oct;160(Pt 10):2243-52. doi: 10.1099/mic.0.078873-0. Epub 2014 Jul 16. PubMed PMID: 25031426.
8: Chowdhury R, Sekirnik R, Brissett NC, Krojer T, Ho CH, Ng SS, Clifton IJ, Ge W, Kershaw NJ, Fox GC, Muniz JRC, Vollmar M, Phillips C, Pilka ES, Kavanagh KL, von Delft F, Oppermann U, McDonough MA, Doherty AJ, Schofield CJ. Ribosomal oxygenases are structurally conserved from prokaryotes to humans. Nature. 2014 Jun 19;510(7505):422-426. doi: 10.1038/nature13263. Epub 2014 May 11. PubMed PMID: 24814345; PubMed Central PMCID: PMC4066111.
9: Zhang H, Fu P, Ke B, Wang S, Li M, Han L, Peng C, Zhang W, Liu R. Metabolomic analysis of biochemical changes in the plasma and urine of collagen-induced arthritis in rats after treatment with Huang-Lian-Jie-Du-Tang. J Ethnopharmacol. 2014 May 28;154(1):55-64. doi: 10.1016/j.jep.2014.03.007. Epub 2014 Apr 4. PubMed PMID: 24709313.
10: Qiu YL, Hanada S, Kamagata Y, Guo RB, Sekiguchi Y. Lactivibrio alcoholicus gen. nov., sp. nov., an anaerobic, mesophilic, lactate-, alcohol-, carbohydrate- and amino-acid-degrading bacterium in the phylum Synergistetes. Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2137-45. doi: 10.1099/ijs.0.060681-0. Epub 2014 Mar 27. PubMed PMID: 24676730.
11: Benina M, Obata T, Mehterov N, Ivanov I, Petrov V, Toneva V, Fernie AR, Gechev TS. Comparative metabolic profiling of Haberlea rhodopensis, Thellungiella halophyla, and Arabidopsis thaliana exposed to low temperature. Front Plant Sci. 2013 Dec 11;4:499. doi: 10.3389/fpls.2013.00499. eCollection 2013. PubMed PMID: 24376451; PubMed Central PMCID: PMC3859123.
12: van Heeswijk WC, Westerhoff HV, Boogerd FC. Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective. Microbiol Mol Biol Rev. 2013 Dec;77(4):628-95. doi: 10.1128/MMBR.00025-13. Review. PubMed PMID: 24296575; PubMed Central PMCID: PMC3973380.
13: Joshi CV, Pathan EK, Punekar NS, Tupe SG, Kapadnis BP, Deshpande MV. A biochemical correlate of dimorphism in a zygomycete Benjaminiella poitrasii: characterization of purified NAD-dependent glutamate dehydrogenase, a target for antifungal agents. Antonie Van Leeuwenhoek. 2013 Jul;104(1):25-36. doi: 10.1007/s10482-013-9921-5. Epub 2013 Apr 16. PubMed PMID: 23588417.
14: Ge W, Wolf A, Feng T, Ho CH, Sekirnik R, Zayer A, Granatino N, Cockman ME, Loenarz C, Loik ND, Hardy AP, Claridge TDW, Hamed RB, Chowdhury R, Gong L, Robinson CV, Trudgian DC, Jiang M, Mackeen MM, Mccullagh JS, Gordiyenko Y, Thalhammer A, Yamamoto A, Yang M, Liu-Yi P, Zhang Z, Schmidt-Zachmann M, Kessler BM, Ratcliffe PJ, Preston GM, Coleman ML, Schofield CJ. Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans. Nat Chem Biol. 2012 Dec;8(12):960-962. doi: 10.1038/nchembio.1093. Epub 2012 Oct 28. PubMed PMID: 23103944; PubMed Central PMCID: PMC4972389.
15: Korvald H, Mølstad Moe AM, Cederkvist FH, Thiede B, Laerdahl JK, Bjørås M, Alseth I. Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones. PLoS One. 2011;6(9):e25188. doi: 10.1371/journal.pone.0025188. Epub 2011 Sep 16. PubMed PMID: 21949882; PubMed Central PMCID: PMC3175000.
16: Shim da J, Nemeria NS, Balakrishnan A, Patel H, Song J, Wang J, Jordan F, Farinas ET. Assignment of function to histidines 260 and 298 by engineering the E1 component of the Escherichia coli 2-oxoglutarate dehydrogenase complex; substitutions that lead to acceptance of substrates lacking the 5-carboxyl group. Biochemistry. 2011 Sep 6;50(35):7705-9. doi: 10.1021/bi200936n. Epub 2011 Aug 10. PubMed PMID: 21809826; PubMed Central PMCID: PMC3190642.
17: Baek JO, Seo JW, Kwon O, Seong SI, Kim IH, Kim CH. Expression and characterization of a second L-amino acid deaminase isolated from Proteus mirabilis in Escherichia coli. J Basic Microbiol. 2011 Apr;51(2):129-35. doi: 10.1002/jobm.201000086. Epub 2011 Feb 7. PubMed PMID: 21298676.
18: Yang M, Chowdhury R, Ge W, Hamed RB, McDonough MA, Claridge TD, Kessler BM, Cockman ME, Ratcliffe PJ, Schofield CJ. Factor-inhibiting hypoxia-inducible factor (FIH) catalyses the post-translational hydroxylation of histidinyl residues within ankyrin repeat domains. FEBS J. 2011 Apr;278(7):1086-97. doi: 10.1111/j.1742-4658.2011.08022.x. Epub 2011 Feb 23. PubMed PMID: 21251231; PubMed Central PMCID: PMC3569879.
19: Bjørnstad LG, Zoppellaro G, Tomter AB, Falnes PØ, Andersson KK. Spectroscopic and magnetic studies of wild-type and mutant forms of the Fe(II)- and 2-oxoglutarate-dependent decarboxylase ALKBH4. Biochem J. 2011 Mar 15;434(3):391-8. doi: 10.1042/BJ20101667. PubMed PMID: 21166655; PubMed Central PMCID: PMC3048578.
20: Zhang L, Ye Y, An Y, Tian Y, Wang Y, Tang H. Systems responses of rats to aflatoxin B1 exposure revealed with metabonomic changes in multiple biological matrices. J Proteome Res. 2011 Feb 4;10(2):614-23. doi: 10.1021/pr100792q. Epub 2010 Dec 8. PubMed PMID: 21080729.