IUPAC/Chemical Name
1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-5-iodopyrimidine-2,4(1H,3H)-dione
InChi Key
XQFRJNBWHJMXHO-RRKCRQDMSA-N
InChi Code
InChI=1S/C9H11IN2O5/c10-4-2-12(9(16)11-8(4)15)7-1-5(14)6(3-13)17-7/h2,5-7,13-14H,1,3H2,(H,11,15,16)/t5-,6+,7+/m0/s1
SMILES Code
O=C1NC(C(I)=CN1[C@@H]2O[C@H](CO)[C@@H](O)C2)=O
Purity
>98% (or refer to the Certificate of Analysis)
Shipping Condition
Shipped under ambient temperature as non-hazardous chemical. This product is stable enough for a few weeks during ordinary shipping and time spent in Customs.
Storage Condition
Dry, dark and at 0 - 4 C for short term (days to weeks) or -20 C for long term (months to years).
Solubility
Soluble in DMSO, not in water
Shelf Life
>2 years if stored properly
Drug Formulation
This drug may be formulated in DMSO
Stock Solution Storage
0 - 4 C for short term (days to weeks), or -20 C for long term (months).
HS Tariff Code
2934.99.9001
Biological target:
Idoxuridine (5-Iodo-2′-deoxyuridine, 5-IUdR, IdUrd) is an iodinated thymidine analogue that competitively inhibits phosphorylases.
In vitro activity:
The model is used to perform a drug-repurposing study, with the main aim to identify existing drugs with the highest 3CLpro inhibition power. Among antiviral agents, lopinavir, idoxuridine, paritaprevir, and favipiravir showed the highest inhibition potential.
Reference: Mol Divers. 2022 Oct;26(5):2631-2645. https://pubmed.ncbi.nlm.nih.gov/35001230/
In vivo activity:
Subsets of IdU+ cells expressed the osteoblast-lineage markers Runx2 and osteocalcin. The IdU+ cells expressing osteocalcin were lining the bone and were negative for the MSC marker p75. In conclusion, mouse periosteum contains nucleoside-label-retaining cells with a phenotype compatible with MSCs that are distinct from pericytes and osteoblasts.
Reference: Eur Cell Mater. 2014 Mar 11;27:185-95; discussion 195. https://pubmed.ncbi.nlm.nih.gov/24614984/
|
Solvent |
mg/mL |
mM |
Solubility |
DMSO |
56.7 |
160.03 |
PBS (pH 7.2) |
5.0 |
14.12 |
Note: There can be variations in solubility for the same chemical from different vendors or different batches from the same vendor. The following factors can affect the solubility of the same chemical: solvent used for crystallization, residual solvent content, polymorphism, salt versus free form, degree of hydration, solvent temperature. Please use the solubility data as a reference only. Warming and sonication will facilitate dissolving. Still have questions? Please contact our Technical Support scientists.
Preparing Stock Solutions
The following data is based on the
product
molecular weight
354.10
Batch specific molecular weights may vary
from batch to batch
due to the degree of hydration, which will
affect the solvent
volumes required to prepare stock solutions.
Concentration / Solvent Volume / Mass |
1 mg |
5 mg |
10 mg |
1 mM |
1.15 mL |
5.76 mL |
11.51 mL |
5 mM |
0.23 mL |
1.15 mL |
2.3 mL |
10 mM |
0.12 mL |
0.58 mL |
1.15 mL |
50 mM |
0.02 mL |
0.12 mL |
0.23 mL |
Formulation protocol:
1. Novak J, Potemkin VA. A new glimpse on the active site of SARS-CoV-2 3CLpro, coupled with drug repurposing study. Mol Divers. 2022 Oct;26(5):2631-2645. doi: 10.1007/s11030-021-10355-8. Epub 2022 Jan 10. PMID: 35001230; PMCID: PMC8743077.
2. Almalki SA, Bawazeer TM, Asghar B, Alharbi A, Aljohani MM, Khalifa ME, El-Metwaly N. Synthesis and characterization of new thiazole-based Co(II) and Cu(II) complexes; therapeutic function of thiazole towards COVID-19 in comparing to current antivirals in treatment protocol. J Mol Struct. 2021 Nov 15;1244:130961. doi: 10.1016/j.molstruc.2021.130961. Epub 2021 Jun 24. PMID: 34188314; PMCID: PMC8222988.
3. Cherry HM, Roelofs AJ, Kurth TB, De Bari C. In vivo phenotypic characterisation of nucleoside label-retaining cells in mouse periosteum. Eur Cell Mater. 2014 Mar 11;27:185-95; discussion 195. doi: 10.22203/ecm.v027a14. PMID: 24614984.
In vitro protocol:
1. Novak J, Potemkin VA. A new glimpse on the active site of SARS-CoV-2 3CLpro, coupled with drug repurposing study. Mol Divers. 2022 Oct;26(5):2631-2645. doi: 10.1007/s11030-021-10355-8. Epub 2022 Jan 10. PMID: 35001230; PMCID: PMC8743077.
2. Almalki SA, Bawazeer TM, Asghar B, Alharbi A, Aljohani MM, Khalifa ME, El-Metwaly N. Synthesis and characterization of new thiazole-based Co(II) and Cu(II) complexes; therapeutic function of thiazole towards COVID-19 in comparing to current antivirals in treatment protocol. J Mol Struct. 2021 Nov 15;1244:130961. doi: 10.1016/j.molstruc.2021.130961. Epub 2021 Jun 24. PMID: 34188314; PMCID: PMC8222988.
In vivo protocol:
1. Cherry HM, Roelofs AJ, Kurth TB, De Bari C. In vivo phenotypic characterisation of nucleoside label-retaining cells in mouse periosteum. Eur Cell Mater. 2014 Mar 11;27:185-95; discussion 195. doi: 10.22203/ecm.v027a14. PMID: 24614984.
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