MedKoo Cat#: 463565 | Name: Cy3-SE
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Description:

WARNING: This product is for research use only, not for human or veterinary use.

Cy3-SE is a hydrophilic amine-reactive fluorescent probe. It displays excitation/emission maxima of 550/570 nm, respectively. It has commonly been used to label nucleic acids.

Chemical Structure

Cy3-SE
Cy3-SE
CAS#146368-16-3

Theoretical Analysis

MedKoo Cat#: 463565

Name: Cy3-SE

CAS#: 146368-16-3

Chemical Formula: C35H41N3O10S2

Exact Mass: 727.2233

Molecular Weight: 727.84

Elemental Analysis: C, 57.76; H, 5.68; N, 5.77; O, 21.98; S, 8.81

Price and Availability

Size Price Availability Quantity
5mg USD 350.00 2 Weeks
10mg USD 615.00 2 Weeks
25mg USD 1,050.00 2 Weeks
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Related CAS #
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Synonym
Cy3-SE; Cy3SE; Cy3 SE; N-hydroxysuccinimidyl Ester Cy3; Sulfo Cyanine3 NHS ester; Sulfo-Cy3 NHS ester;
IUPAC/Chemical Name
2-((E)-3-((E)-1-(6-((2,5-dioxopyrrolidin-1-yl)oxy)-6-oxohexyl)-3,3-dimethyl-5-sulfoindolin-2-ylidene)prop-1-en-1-yl)-1-ethyl-3,3-dimethyl-3H-indol-1-ium-5-sulfonate
InChi Key
SOVMUUCAZOFIQP-UHFFFAOYSA-N
InChi Code
InChI=1S/C35H41N3O10S2/c1-6-36-27-16-14-23(49(42,43)44)21-25(27)34(2,3)29(36)11-10-12-30-35(4,5)26-22-24(50(45,46)47)15-17-28(26)37(30)20-9-7-8-13-33(41)48-38-31(39)18-19-32(38)40/h10-12,14-17,21-22H,6-9,13,18-20H2,1-5H3,(H-,42,43,44,45,46,47)
SMILES Code
O=C(CCCCCN1/C(C(C)(C2=C1C=CC(S(O)(=O)=O)=C2)C)=C/C=C/C3=[N+](C4=CC=C(C=C4C3(C)C)S([O-])(=O)=O)CC)ON5C(CCC5=O)=O
Appearance
Solid powder
Purity
>95% (or refer to the Certificate of Analysis)
Shipping Condition
Shipped under ambient temperature as non-hazardous chemical. This product is stable enough for a few weeks during ordinary shipping and time spent in Customs.
Storage Condition
Dry, dark and at 0 - 4 C for short term (days to weeks) or -20 C for long term (months to years).
Solubility
Soluble in DMSO
Shelf Life
>3 years if stored properly
Drug Formulation
This drug may be formulated in DMSO
Stock Solution Storage
0 - 4 C for short term (days to weeks), or -20 C for long term (months).
HS Tariff Code
2934.99.9001
More Info

Preparing Stock Solutions

The following data is based on the product molecular weight 727.84 Batch specific molecular weights may vary from batch to batch due to the degree of hydration, which will affect the solvent volumes required to prepare stock solutions.

Recalculate based on batch purity %
Concentration / Solvent Volume / Mass 1 mg 5 mg 10 mg
1 mM 1.15 mL 5.76 mL 11.51 mL
5 mM 0.23 mL 1.15 mL 2.3 mL
10 mM 0.12 mL 0.58 mL 1.15 mL
50 mM 0.02 mL 0.12 mL 0.23 mL
1: Harvey BJ, Levitus M. Nucleobase-specific enhancement of Cy3 fluorescence. J Fluoresc. 2009 May;19(3):443-8. doi: 10.1007/s10895-008-0431-1. Epub 2008 Oct 30. PMID: 18972191.