MedKoo Cat#: 558948 | Name: JOE phosphoramidite, 5-isomer
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Description:

WARNING: This product is for research use only, not for human or veterinary use.

JOE is a xanthene dye, fluorescein derivative possessing two chloro and two methoxy substituents. This fluorophore is a useful label for oligonucleotides. Its absorption and emission spectra are located between FAM and TAMRA. The fluorophore can be introduced into oligonucleotide using this phosphoramidite. It tolerates standard ammonium deblock conditions. This product contains pure isomer of 5-JOE dye.

Chemical Structure

JOE phosphoramidite, 5-isomer
JOE phosphoramidite, 5-isomer
CAS#N/A

Theoretical Analysis

MedKoo Cat#: 558948

Name: JOE phosphoramidite, 5-isomer

CAS#: N/A

Chemical Formula: C48H60Cl2N3O12P

Exact Mass: 971.3292

Molecular Weight: 972.89

Elemental Analysis: C, 59.26; H, 6.22; Cl, 7.29; N, 4.32; O, 19.73; P, 3.18

Price and Availability

Size Price Availability Quantity
250mg USD 450.00 2 Weeks
1g USD 1,050.00 2 Weeks
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Synonym
JOE phosphoramidite, 5-isomer
IUPAC/Chemical Name
4',5'-dichloro-5-((6-(((2-cyanoethoxy)(diisopropylamino)phosphanyl)oxy)hexyl)carbamoyl)-2',7'-dimethoxy-3-oxo-3H-spiro[isobenzofuran-1,9'-xanthene]-3',6'-diyl bis(2,2-dimethylpropanoate)
InChi Key
NTHFRWWLZTWSML-UHFFFAOYSA-N
InChi Code
InChI=1S/C48H60Cl2N3O12P/c1-27(2)53(28(3)4)66(61-23-17-20-51)60-22-16-14-13-15-21-52-42(54)29-18-19-31-30(24-29)43(55)65-48(31)32-25-34(58-11)40(63-44(56)46(5,6)7)36(49)38(32)62-39-33(48)26-35(59-12)41(37(39)50)64-45(57)47(8,9)10/h18-19,24-28H,13-17,21-23H2,1-12H3,(H,52,54)
SMILES Code
ClC1=C(OC(C(Cl)=C(OC(C(C)(C)C)=O)C(OC)=C2)=C2C3(O4)C5=CC=C(C(NCCCCCCOP(OCCC#N)N(C(C)C)C(C)C)=O)C=C5C4=O)C3=CC(OC)=C1OC(C(C)(C)C)=O
Appearance
Solid powder
Purity
>95% (or refer to the Certificate of Analysis)
Shipping Condition
Shipped under ambient temperature as non-hazardous chemical. This product is stable enough for a few weeks during ordinary shipping and time spent in Customs.
Storage Condition
Dry, dark and at 0 - 4 C for short term (days to weeks) or -20 C for long term (months to years).
Solubility
Soluble in DMSO
Shelf Life
>3 years if stored properly
Drug Formulation
This drug may be formulated in DMSO
Stock Solution Storage
0 - 4 C for short term (days to weeks), or -20 C for long term (months).
HS Tariff Code
2934.99.9001
More Info

Preparing Stock Solutions

The following data is based on the product molecular weight 972.89 Batch specific molecular weights may vary from batch to batch due to the degree of hydration, which will affect the solvent volumes required to prepare stock solutions.

Recalculate based on batch purity %
Concentration / Solvent Volume / Mass 1 mg 5 mg 10 mg
1 mM 1.15 mL 5.76 mL 11.51 mL
5 mM 0.23 mL 1.15 mL 2.3 mL
10 mM 0.12 mL 0.58 mL 1.15 mL
50 mM 0.02 mL 0.12 mL 0.23 mL