1: Deshmukh AS, Mitra P, Kolagani A, Gurupwar R. Cdk-related kinase 9 regulates RNA polymerase II mediated transcription in Toxoplasma gondii. Biochim Biophys Acta. 2018 Feb 18. pii: S1874-9399(17)30373-5. doi: 10.1016/j.bbagrm.2018.02.004. [Epub ahead of print] PubMed PMID: 29466697.
2: Xing Y, Zhao S, Wei Q, Gong S, Zhao X, Zhou F, Ai-Lamki R, Ortmann D, Du M, Pedersen R, Shang G, Si S, Morrell NW, Yang J. A novel piperidine identified by stem cell based screening attenuates pulmonary arterial hypertension via regulating BMP2 and PTGS2 levels. Eur Respir J. 2018 Feb 15. pii: 1702229. doi: 10.1183/13993003.02229-2017. [Epub ahead of print] PubMed PMID: 29449428.
3: Battaglia S, Lidschreiber M, Baejen C, Torkler P, Vos SM, Cramer P. RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases. Elife. 2017 May 24;6. pii: e25637. doi: 10.7554/eLife.25637. PubMed PMID: 28537551; PubMed Central PMCID: PMC5457138.
4: Singh AK, Rastogi S, Shukla H, Asalam M, Rath SK, Akhtar MS. Cdc15 Phosphorylates the C-terminal Domain of RNA Polymerase II for Transcription during Mitosis. J Biol Chem. 2017 Mar 31;292(13):5507-5518. doi: 10.1074/jbc.M116.761056. Epub 2017 Feb 15. PubMed PMID: 28202544; PubMed Central PMCID: PMC5392693.
5: Spain MM, Ansari SA, Pathak R, Palumbo MJ, Morse RH, Govind CK. The RSC complex localizes to coding sequences to regulate Pol II and histone occupancy. Mol Cell. 2014 Dec 4;56(5):653-66. doi: 10.1016/j.molcel.2014.10.002. Epub 2014 Nov 6. PubMed PMID: 25457164; PubMed Central PMCID: PMC4258446.
6: Burugula BB, Jeronimo C, Pathak R, Jones JW, Robert F, Govind CK. Histone deacetylases and phosphorylated polymerase II C-terminal domain recruit Spt6 for cotranscriptional histone reassembly. Mol Cell Biol. 2014 Nov 15;34(22):4115-29. doi: 10.1128/MCB.00695-14. Epub 2014 Sep 2. PubMed PMID: 25182531; PubMed Central PMCID: PMC4248711.
7: Bowman EA, Kelly WG. RNA polymerase II transcription elongation and Pol II CTD Ser2 phosphorylation: A tail of two kinases. Nucleus. 2014 May-Jun;5(3):224-36. doi: 10.4161/nucl.29347. Epub 2014 May 30. Review. PubMed PMID: 24879308; PubMed Central PMCID: PMC4133218.
8: Lidschreiber M, Leike K, Cramer P. Cap completion and C-terminal repeat domain kinase recruitment underlie the initiation-elongation transition of RNA polymerase II. Mol Cell Biol. 2013 Oct;33(19):3805-16. doi: 10.1128/MCB.00361-13. Epub 2013 Jul 22. PubMed PMID: 23878398; PubMed Central PMCID: PMC3811861.
9: Chymkowitch P, Enserink JM. The cell cycle rallies the transcription cycle: Cdc28/Cdk1 is a cell cycle-regulated transcriptional CDK. Transcription. 2013 Jan-Feb;4(1):3-6. doi: 10.4161/trns.22456. Epub 2012 Nov 6. Review. PubMed PMID: 23131667; PubMed Central PMCID: PMC3644040.
10: Tomson BN, Crisucci EM, Heisler LE, Gebbia M, Nislow C, Arndt KM. Effects of the Paf1 complex and histone modifications on snoRNA 3'-end formation reveal broad and locus-specific regulation. Mol Cell Biol. 2013 Jan;33(1):170-82. doi: 10.1128/MCB.01233-12. Epub 2012 Oct 29. PubMed PMID: 23109428; PubMed Central PMCID: PMC3536304.
11: García A, Collin A, Calvo O. Sub1 associates with Spt5 and influences RNA polymerase II transcription elongation rate. Mol Biol Cell. 2012 Nov;23(21):4297-312. doi: 10.1091/mbc.E12-04-0331. Epub 2012 Sep 12. PubMed PMID: 22973055; PubMed Central PMCID: PMC3484106.
12: Qiu H, Hu C, Gaur NA, Hinnebusch AG. Pol II CTD kinases Bur1 and Kin28 promote Spt5 CTR-independent recruitment of Paf1 complex. EMBO J. 2012 Aug 15;31(16):3494-505. doi: 10.1038/emboj.2012.188. Epub 2012 Jul 13. PubMed PMID: 22796944; PubMed Central PMCID: PMC3419927.
13: Shchebet A, Karpiuk O, Kremmer E, Eick D, Johnsen SA. Phosphorylation by cyclin-dependent kinase-9 controls ubiquitin-conjugating enzyme-2A function. Cell Cycle. 2012 Jun 1;11(11):2122-7. doi: 10.4161/cc.20548. Epub 2012 Jun 1. PubMed PMID: 22592529.
14: Ding D, Muthuswamy S, Meier I. Functional interaction between the Arabidopsis orthologs of spindle assembly checkpoint proteins MAD1 and MAD2 and the nucleoporin NUA. Plant Mol Biol. 2012 Jun;79(3):203-16. doi: 10.1007/s11103-012-9903-4. Epub 2012 Mar 29. PubMed PMID: 22457071.
15: McKay SL, Johnson TL. An investigation of a role for U2 snRNP spliceosomal components in regulating transcription. PLoS One. 2011 Jan 24;6(1):e16077. doi: 10.1371/journal.pone.0016077. PubMed PMID: 21283673; PubMed Central PMCID: PMC3025917.
16: Clausing E, Mayer A, Chanarat S, Müller B, Germann SM, Cramer P, Lisby M, Strässer K. The transcription elongation factor Bur1-Bur2 interacts with replication protein A and maintains genome stability during replication stress. J Biol Chem. 2010 Dec 31;285(53):41665-74. doi: 10.1074/jbc.M110.193292. Epub 2010 Nov 12. PubMed PMID: 21075850; PubMed Central PMCID: PMC3009894.
17: Bartkowiak B, Liu P, Phatnani HP, Fuda NJ, Cooper JJ, Price DH, Adelman K, Lis JT, Greenleaf AL. CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1. Genes Dev. 2010 Oct 15;24(20):2303-16. doi: 10.1101/gad.1968210. PubMed PMID: 20952539; PubMed Central PMCID: PMC2956209.
18: García A, Rosonina E, Manley JL, Calvo O. Sub1 globally regulates RNA polymerase II C-terminal domain phosphorylation. Mol Cell Biol. 2010 Nov;30(21):5180-93. doi: 10.1128/MCB.00819-10. Epub 2010 Sep 7. PubMed PMID: 20823273; PubMed Central PMCID: PMC2953048.
19: Mayer A, Lidschreiber M, Siebert M, Leike K, Söding J, Cramer P. Uniform transitions of the general RNA polymerase II transcription complex. Nat Struct Mol Biol. 2010 Oct;17(10):1272-8. doi: 10.1038/nsmb.1903. Epub 2010 Sep 5. PubMed PMID: 20818391.
20: Tietjen JR, Zhang DW, Rodríguez-Molina JB, White BE, Akhtar MS, Heidemann M, Li X, Chapman RD, Shokat K, Keles S, Eick D, Ansari AZ. Chemical-genomic dissection of the CTD code. Nat Struct Mol Biol. 2010 Sep;17(9):1154-61. doi: 10.1038/nsmb.1900. Epub 2010 Aug 29. PubMed PMID: 20802488; PubMed Central PMCID: PMC4035229.